Safe Probiotics for ME/CFS, IBS, IBD etc. from Complex Data Model

This is a brief post that draws on the analytical approach from the methodology used in Mast Cell Activation Syndrome and Multiple Chemical Sensitivity. Atypically, we are able to determine which probiotics are likely better than others. Rather than delve into the technical details—which can overwhelm those experiencing brain fog—I’m going straight to the results for this set of symptoms:

  • ME/CFS – not specific
  • ME/CFS – with IBS
  • ME/CFS – without IBS
  • IBS
  • Long COVID
  • IBD
  • Crohn’s Disease

We are filtering to P < 0.0001 (ZScore of +/-3.72). We are also restricting to strictly safe, that is no predicted inappropriate shifts to keep the list shorted and easier to handle for the brain fogged.

The Good Count below are the number of bacterium that it has the desired effect upon. The Good value is an estimate of the amount of influence.

  • The Good Count is the number of bacteria that are likely to shift in a positive direction direction.
  • Good is an scaled aggregation of the R2 values for these bacteria. One bactieria may have a R2 and slope of (.9 and 1.5) another of (.2 and 5). The result is .9 * 1.5 + .2 * 5 =2.35.

ME/CFS (General)

NameGoodGood Count
Clostridium beijerinckii1369
Niallia circulans795

This is not unexpected because the vagueness of description results in loss of clarity.

Condition: ME/CFS with IBS

NameGoodGood Count
Bifidobacterium adolescentis167861
Bifidobacterium catenulatum110840
Bifidobacterium bifidum75031
Clostridium beijerinckii1369
Niallia circulans795

Condition: ME/CFS without IBS

NameGoodGood Count
Lactococcus lactis76535
Clostridium beijerinckii1369
Niallia circulans795

Irritable Bowel Syndrome

NameGoodGood Count
Christensenella minuta279698
Enterococcus faecium233493
Anaerobutyricum hallii231793
Lactococcus cremoris190977
Bifidobacterium adolescentis167861
Blautia wexlerae164571
Bifidobacterium catenulatum110840
Lactococcus lactis76535
Bifidobacterium bifidum75031
Clostridium beijerinckii1369
Niallia circulans795

Long COVID

NameGoodGood Count
Christensenella minuta279698
Enterococcus faecium233493
Anaerobutyricum hallii231793
Lactococcus cremoris190977
Bifidobacterium adolescentis167861
Blautia wexlerae164571
Bifidobacterium catenulatum110840
Lactococcus lactis76535
Bifidobacterium bifidum75031
Clostridium beijerinckii1369
Niallia circulans795

Inflammatory Bowel Disease (IBD)

NameGoodGood Count
Enterococcus faecium233493
Lactococcus cremoris190977
Bifidobacterium adolescentis167861
Bifidobacterium catenulatum110840
Lactococcus lactis76535
Bifidobacterium bifidum75031
Clostridium beijerinckii1369
Niallia circulans795

Crohn’s Disease

NameGoodGood Count
Christensenella minuta279698
Enterococcus faecium233493
Anaerobutyricum hallii231793
Lactococcus cremoris190977
Bifidobacterium adolescentis167861
Blautia wexlerae164571
Bifidobacterium catenulatum110840
Lactococcus lactis76535
Bifidobacterium bifidum75031
Clostridium beijerinckii1369
Niallia circulans795

Summary

This feature will not be added to the web site because the computations has taken hours to run and require a large amount of memory (most of the 32 GB available). In general, too low amounts dominated as the most significant pattern. It is not killing off high bacteria but encouraging low bacteria that seems to apply for these conditions.

It is interesting to note that Lactobacillus never appears. You may notice that some conditions are very similar which is not unexpected to me. There are commonality of low bacteria across conditions.

Note: ME/CFS With IBS suggestions include ME/CFS and IBS suggestions. IBS and IBD have some similarity but are different. Crohn’s disease seems more likely to be a progression of IBS and not IBD. The data model may be useful for seeing likely disease progression paths.