In coding up a website to make analysis easier, I had to figure out what uBiome deems to be normal. Getting a standard for a microbiome is very fuzzy and any standard can be challenged endlessly.
With CFS/FM/IBS, we rather work with poor assumptions instead of waiting further generations for a better answer to occur(whether that is possible is also debatable!).
The following are my inferences that uBiome may be using.
The Phylum or Top Level
| Firmicutes |
55.133% |
| Bacteroidetes |
26.704% |
| Acidobacteria |
4.302% |
| Proteobacteria |
3.193% |
| Verrucomicrobia |
2.737% |
| Fusobacteria |
2.209% |
| Cyanobacteria |
1.989% |
| Tenericutes |
1.347% |
| Spirochaetes |
1.012% |
| Synergistetes |
0.413% |
| Fibrobacteres |
0.379% |
| Lentisphaerae |
0.294% |
| Candidatus Saccharibacteria |
0.283% |
| Euryarchaeota |
0.004% |
The Class or Second Layer
| Clostridia |
48.080% |
| Bacteroidia |
25.455% |
| Actinobacteria |
4.229% |
| Verrucomicrobiae |
2.466% |
| Gammaproteobacteria |
2.320% |
| Alphaproteobacteria |
2.318% |
| Negativicutes |
2.266% |
| Fusobacteriia |
2.113% |
| Bacilli |
1.970% |
| Acidobacteriia |
1.543% |
| Mollicutes |
1.296% |
| Betaproteobacteria |
1.160% |
| Erysipelotrichia |
0.963% |
| Spirochaetia |
0.949% |
| Epsilonproteobacteria |
0.683% |
| Flavobacteriia |
0.462% |
| Synergistia |
0.395% |
| Deltaproteobacteria |
0.367% |
| Fibrobacteria |
0.363% |
| Opitutae |
0.337% |
| Lentisphaeria |
0.265% |
| Methanobacteria |
0.004% |
The Order or Third Layer
| Clostridiales |
39.69% |
| Bacteroidales |
20.81% |
| Sphingomonadales |
3.48% |
| Rhizobiales |
3.22% |
| Aeromonadales |
2.57% |
| Verrucomicrobiales |
2.03% |
| Enterobacteriales |
1.90% |
| Selenomonadales |
1.87% |
| Actinomycetales |
1.85% |
| Fusobacteriales |
1.74% |
| Acidobacteriales |
1.70% |
| Coriobacteriales |
1.70% |
| Pseudomonadales |
1.54% |
| Lactobacillales |
1.47% |
| Rhodospirillales |
1.46% |
| Bifidobacteriales |
1.42% |
| Anaeroplasmatales |
1.27% |
| Bacillales |
1.18% |
| Rhodocyclales |
1.18% |
| Burkholderiales |
0.91% |
| Neisseriales |
0.85% |
| Erysipelotrichales |
0.79% |
| Vibrionales |
0.67% |
| Caulobacterales |
0.63% |
| Campylobacterales |
0.56% |
| Pasteurellales |
0.54% |
| Spirochaetales |
0.53% |
| Flavobacteriales |
0.38% |
| Synergistales |
0.33% |
| Fibrobacterales |
0.30% |
| Puniceicoccales |
0.28% |
| Desulfovibrionales |
0.27% |
| Thermoanaerobacterales |
0.27% |
| Acholeplasmatales |
0.26% |
| Syntrophobacterales |
0.21% |
| Mycoplasmatales |
0.14% |
| Methanobacteriales |
0.00% |
The Family or Fourth Layer
| Lachnospiraceae |
19.379% |
| Bacteroidaceae |
13.985% |
| Ruminococcaceae |
10.748% |
| Moraxellaceae |
3.231% |
| Sphingomonadaceae |
3.049% |
| Prevotellaceae |
2.983% |
| Hyphomicrobiaceae |
2.375% |
| Porphyromonadaceae |
2.323% |
| Clostridiaceae |
1.929% |
| Verrucomicrobiaceae |
1.781% |
| Clostridiales Family XI. Incertae Sedis |
1.763% |
| Enterobacteriaceae |
1.666% |
| Fusobacteriaceae |
1.599% |
| Rikenellaceae |
1.571% |
| Staphylococcaceae |
1.546% |
| Acidobacteriaceae |
1.486% |
| Coriobacteriaceae |
1.484% |
| Veillonellaceae |
1.270% |
| Bifidobacteriaceae |
1.244% |
| Corynebacteriaceae |
1.190% |
| Propionibacteriaceae |
1.188% |
| Rhodospirillaceae |
1.184% |
| Anaeroplasmataceae |
1.131% |
| Acidaminococcaceae |
1.002% |
| Peptostreptococcaceae |
0.964% |
| Rhodocyclaceae |
0.904% |
| Enterococcaceae |
0.881% |
| Brucellaceae |
0.855% |
| Bacillaceae |
0.818% |
| Sutterellaceae |
0.766% |
| Neisseriaceae |
0.747% |
| Streptococcaceae |
0.697% |
| Erysipelotrichaceae |
0.684% |
| Carnobacteriaceae |
0.678% |
| Vibrionaceae |
0.590% |
| Mycobacteriaceae |
0.590% |
| Pseudomonadaceae |
0.588% |
| Aeromonadaceae |
0.562% |
| Caulobacteraceae |
0.552% |
| Lactobacillaceae |
0.542% |
| Micrococcaceae |
0.475% |
| Pasteurellaceae |
0.474% |
| Brevibacteriaceae |
0.445% |
| Campylobacteraceae |
0.432% |
| Leuconostocaceae |
0.415% |
| Methylobacteriaceae |
0.415% |
| Comamonadaceae |
0.411% |
| Actinomycetaceae |
0.384% |
| Flavobacteriaceae |
0.331% |
| Brachyspiraceae |
0.309% |
| Aerococcaceae |
0.295% |
| Synergistaceae |
0.285% |
| Burkholderiaceae |
0.285% |
| Christensenellaceae |
0.251% |
| Desulfovibrionaceae |
0.240% |
| Peptococcaceae |
0.235% |
| Acholeplasmataceae |
0.235% |
| Fibrobacteraceae |
0.218% |
| Victivallaceae |
0.191% |
| Planococcaceae |
0.176% |
| Oscillospiraceae |
0.167% |
| Clostridiales Family XIII. Incertae Sedis |
0.165% |
| Leptotrichiaceae |
0.156% |
| Mycoplasmataceae |
0.122% |
| Oxalobacteraceae |
0.121% |
| Eubacteriaceae |
0.105% |
| Caldicoprobacteraceae |
0.048% |
| Catabacteriaceae |
0.047% |
| Thermoanaerobacteraceae |
0.037% |
| Methanobacteriaceae |
0.003% |
The Genus or Fifth Layer
| Bacteroides |
11.76% |
| Faecalibacterium |
6.67% |
| Blautia |
6.48% |
| Roseburia |
4.02% |
| Alloprevotella |
2.66% |
| Megamonas |
2.53% |
| Subdoligranulum |
1.53% |
| Akkermansia |
1.53% |
| Pseudobutyrivibrio |
1.43% |
| Staphylococcus |
1.40% |
| Acinetobacter |
1.36% |
| Fusobacterium |
1.35% |
| Fusicatenibacter |
1.33% |
| Parabacteroides |
1.30% |
| Alistipes |
1.26% |
| Kluyvera |
1.25% |
| Anaeroplasma |
1.20% |
| Anaerostipes |
1.18% |
| Collinsella |
1.12% |
| Paraprevotella |
1.07% |
| Sarcina |
1.06% |
| Bifidobacterium |
1.05% |
| Thalassospira |
1.02% |
| Propionibacterium |
1.00% |
| Corynebacterium |
0.92% |
| Sutterella |
0.92% |
| Dorea |
0.79% |
| Enterobacter |
0.79% |
| Succiniclasticum |
0.78% |
| Anaerotruncus |
0.77% |
| Azospira |
0.77% |
| Lactobacillus |
0.76% |
| Phascolarctobacterium |
0.75% |
| Acidaminococcus |
0.75% |
| Tepidimonas |
0.75% |
| Prevotella |
0.75% |
| Enterococcus |
0.74% |
| Finegoldia |
0.72% |
| Peptoniphilus |
0.71% |
| Lachnospira |
0.70% |
| Asteroleplasma |
0.67% |
| Veillonella |
0.65% |
| Sphingomonas |
0.64% |
| Klebsiella |
0.64% |
| Gardnerella |
0.64% |
| Dialister |
0.64% |
| Neisseria |
0.63% |
| Anaerococcus |
0.62% |
| Catenibacterium |
0.61% |
| Dysgonomonas |
0.60% |
| Porphyromonas |
0.59% |
| Megasphaera |
0.59% |
| Barnesiella |
0.58% |
| Streptococcus |
0.56% |
| Cellulosilyticum |
0.53% |
| Rothia |
0.50% |
| Ochrobactrum |
0.50% |
| Bacillus |
0.50% |
| Mycobacterium |
0.50% |
| Pseudomonas |
0.47% |
| Aeromonas |
0.47% |
| Weissella |
0.46% |
| Intestinibacter |
0.44% |
| Clostridium |
0.44% |
| Pediococcus |
0.42% |
| Parasutterella |
0.39% |
| Butyrivibrio |
0.38% |
| Brevibacterium |
0.37% |
| Haemophilus |
0.37% |
| Campylobacter |
0.36% |
| Brevundimonas |
0.36% |
| Varibaculum |
0.33% |
| Cronobacter |
0.32% |
| Murdochiella |
0.32% |
| Parvimonas |
0.30% |
| Desulfovibrio |
0.29% |
| Actinobacillus |
0.28% |
| Mogibacterium |
0.27% |
| Mobiluncus |
0.27% |
| Brachyspira |
0.26% |
| Romboutsia |
0.26% |
| Erysipelatoclostridium |
0.26% |
| Methylobacterium |
0.25% |
| Abiotrophia |
0.25% |
| Peptostreptococcus |
0.24% |
| Ralstonia |
0.24% |
| Asaccharospora |
0.24% |
| Flavobacterium |
0.23% |
| Comamonas |
0.23% |
| Fastidiosipila |
0.23% |
| Anaerofilum |
0.22% |
| Granulicatella |
0.22% |
| Johnsonella |
0.21% |
| Aggregatibacter |
0.21% |
| Candidatus Saccharimonas |
0.20% |
| Pasteurella |
0.20% |
| Odoribacter |
0.19% |
| Eisenbergiella |
0.19% |
| Acholeplasma |
0.19% |
| Flavonifractor |
0.19% |
| Delftia |
0.19% |
| Butyricicoccus |
0.19% |
| Robinsoniella |
0.18% |
| Lactococcus |
0.18% |
| Fibrobacter |
0.18% |
| Gemella |
0.18% |
| Butyricimonas |
0.18% |
| Devosia |
0.17% |
| Turicibacter |
0.17% |
| Coprobacillus |
0.16% |
| Terrisporobacter |
0.16% |
| Victivallis |
0.16% |
| Atopobium |
0.16% |
| Gallicola |
0.16% |
| Anaerobacter |
0.16% |
| Fretibacterium |
0.16% |
| Moryella |
0.16% |
| Scardovia |
0.15% |
| Oribacterium |
0.15% |
| Cloacibacillus |
0.15% |
| Dielma |
0.15% |
| Pantoea |
0.15% |
| Enterorhabdus |
0.15% |
| Coprobacter |
0.15% |
| Anaerosporobacter |
0.14% |
| Actinomyces |
0.14% |
| Oscillibacter |
0.14% |
| Solobacterium |
0.13% |
| Peptoclostridium |
0.13% |
| Shuttleworthia |
0.13% |
| Bilophila |
0.13% |
| Leptotrichia |
0.13% |
| Leuconostoc |
0.12% |
| Candidatus Stoquefichus |
0.12% |
| Negativicoccus |
0.12% |
| Senegalimassilia |
0.11% |
| Mitsuokella |
0.11% |
| Slackia |
0.107% |
| Sedimentibacter |
0.106% |
| Eggerthella |
0.104% |
| Ureaplasma |
0.103% |
| Oscillospira |
0.100% |
| Marvinbryantia |
0.099% |
| Parasporobacterium |
0.097% |
| Eubacterium |
0.095% |
| Papillibacter |
0.095% |
| Pseudoflavonifractor |
0.091% |
| Peptococcus |
0.091% |
| Acetitomaculum |
0.089% |
| Intestinimonas |
0.081% |
| Lactonifactor |
0.070% |
| Hespellia |
0.063% |
| Allisonella |
0.063% |
| Anaerovorax |
0.062% |
| Anaerobacillus |
0.060% |
| Parvibacter |
0.051% |
| Anaerobacterium |
0.050% |
| Candidatus Soleaferrea |
0.050% |
| Hydrogenoanaerobacterium |
0.050% |
| Caldicoprobacter |
0.048% |
| Adlercreutzia |
0.045% |
| Lachnobacterium |
0.043% |
| Herbaspirillum |
0.041% |
| Gordonibacter |
0.041% |
| Acetivibrio |
0.040% |
| Catabacter |
0.040% |
| Anaerofustis |
0.037% |
| Holdemania |
0.034% |
| Sporobacter |
0.031% |
| Christensenella |
0.030% |
| Gelria |
0.030% |
| Acetanaerobacterium |
0.026% |
| Methanobrevibacter |
0.0022% |
| Howardella |
0.0011% |
| Bergeyella |
0.0010% |
| Paraeggerthella |
0.0005% |
| Methanosphaera |
0.0003% |
| Citrobacter |
0.0003% |
| Synergistes |
0.0002% |
| Catonella |
0.0002% |
| Denitratisoma |
0.0002% |
| Lautropia |
0.0001% |
| Capnocytophaga |
0.0001% |
| Aliivibrio |
0.0001% |
|
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