If you have downloaded your uBiome as Json and read the contents, you will see that some bacteria species are reported. Here is a list that I have compiled (likely incomplete).
Species Seen in various Reports
It is interesting to note that Lactobacillus Reuteri is not listed. Is it because it was not detected in any samples OR is it hard to identify?
Name |
Abiotrophia defectiva |
Acidaminococcus intestini |
Acidaminococcus sp. BV3L6 |
Acidaminococcus sp. D21 |
Actinobacillus porcinus |
Actinomyces gerencseriae |
Actinomyces graevenitzii |
Actinomyces odontolyticus |
Actinomyces sp. 2002-2301122 |
Actinomyces sp. ICM47 |
Actinomyces sp. ICM54 |
Actinomyces sp. oral strain Hal-1065 |
Actinomyces sp. oral taxon 175 |
Actinomyces sp. ph3 |
Actinomyces sp. S9 PR-21 |
Actinomyces turicensis |
Actinomyces viscosus |
Adlercreutzia equolifaciens |
Aeromonas salmonicida |
Aggregatibacter aphrophilus |
Aggregatibacter segnis |
Akkermansia muciniphila |
Aliivibrio wodanis |
Alistipes finegoldii |
Alistipes indistinctus |
Alistipes massiliensis |
Alistipes putredinis |
Alistipes shahii |
Alistipes sp. 627 |
Alistipes sp. EBA6-25cl2 |
Alistipes sp. HGB5 |
Alistipes sp. NML05A004 |
Alistipes sp. RMA 9912 |
Allisonella histaminiformans |
Alloprevotella tannerae |
Anaerobacillus alkalidiazotrophicus |
Anaerococcus lactolyticus |
Anaerococcus murdochii |
Anaerococcus octavius |
Anaerococcus sp. 8404299 |
Anaerococcus sp. 8405254 |
Anaerococcus sp. 9401487 |
Anaerococcus sp. 9402080 |
Anaerococcus sp. PH9 |
Anaerococcus sp. S8 87-3 |
Anaerococcus tetradius |
Anaerococcus vaginalis |
Anaerofustis stercorihominis |
Anaerosporobacter mobilis |
Anaerostipes caccae |
Anaerostipes hadrus |
Anaerostipes sp. 3_2_56FAA |
Anaerostipes sp. 494a |
Anaerostipes sp. 5_1_63FAA |
Anaerostipes sp. IE4 |
Anaerotruncus colihominis |
Anaerotruncus sp. NML 070203 |
Asaccharospora irregularis |
Atopobium rimae |
Atopobium sp. HHRM1715 |
Atopobium sp. ICM58 |
Atopobium vaginae |
Bacillus sp. N-16 |
Bacillus sp. T41 |
Bacteroides acidifaciens |
Bacteroides barnesiae |
Bacteroides caccae |
Bacteroides clarus |
Bacteroides coprocola |
Bacteroides coprophilus |
Bacteroides dorei |
Bacteroides eggerthii |
Bacteroides faecis |
Bacteroides finegoldii |
Bacteroides fluxus |
Bacteroides fragilis |
Bacteroides gallinarum |
Bacteroides intestinalis |
Bacteroides massiliensis |
Bacteroides nordii |
Bacteroides ovatus |
Bacteroides plebeius |
Bacteroides salyersiae |
Bacteroides sp. |
Bacteroides sp. 14(A) |
Bacteroides sp. 2_2_4 |
Bacteroides sp. 3_1_40A |
Bacteroides sp. 35AE37 |
Bacteroides sp. 4072 |
Bacteroides sp. AR20 |
Bacteroides sp. AR29 |
Bacteroides sp. D20 |
Bacteroides sp. D22 |
Bacteroides sp. DJF_B097 |
Bacteroides sp. dnLKV9 |
Bacteroides sp. EBA5-17 |
Bacteroides sp. HPS0048 |
Bacteroides sp. J1511 |
Bacteroides sp. S-17 |
Bacteroides sp. SLC1-38 |
Bacteroides sp. TP-5 |
Bacteroides sp. XB12B |
Bacteroides sp. XB44A |
Bacteroides stercorirosoris |
Bacteroides stercoris |
Bacteroides thetaiotaomicron |
Bacteroides vulgatus |
Bacteroides xylanisolvens |
Barnesiella intestinihominis |
Barnesiella sp. 177 |
Barnesiella sp. EBA4-14 |
Bifidobacterium adolescentis |
Bifidobacterium animalis |
Bifidobacterium bifidum |
Bifidobacterium breve |
Bifidobacterium catenulatum |
Bifidobacterium choerinum |
Bifidobacterium kashiwanohense |
Bifidobacterium longum |
Bifidobacterium pseudocatenulatum |
Bifidobacterium pullorum |
Bifidobacterium sp. |
Bifidobacterium tsurumiense |
Bilophila sp. 4_1_30 |
Bilophila wadsworthia |
Blautia coccoides |
Blautia faecis |
Blautia glucerasea |
Blautia hansenii |
Blautia hydrogenotrophica |
Blautia luti |
Blautia producta |
Blautia sp. Ser5 |
Blautia sp. Ser8 |
Blautia sp. YHC-4 |
Blautia stercoris |
Blautia wexlerae |
Brachyspira aalborgi |
Brevibacterium paucivorans |
Brevundimonas sp. sptzw11 |
Brevundimonas sp. TMB3-6 |
Brevundimonas sp. V3M6 |
Butyricicoccus pullicaecorum |
Butyricimonas sp. 214-4 |
Butyricimonas sp. JCM 18676 |
Butyricimonas sp. JCM 18677 |
Butyricimonas synergistica |
Butyricimonas virosa |
Butyrivibrio crossotus |
Campylobacter concisus |
Campylobacter hominis |
Campylobacter ureolyticus |
Catabacter hongkongensis |
Catenibacterium mitsuokai |
Catonella morbi |
Cellulosilyticum lentocellum |
Cellulosilyticum ruminicola |
Christensenella minuta |
Citrobacter sp. BW4 |
Cloacibacillus evryensis |
Clostridium sp. LAM0A37 |
Collinsella aerofaciens |
Collinsella intestinalis |
Collinsella sp. GD3 |
Collinsella tanakaei |
Comamonas sp. j41 |
Coprobacillus sp. D6 |
Coprobacter fastidiosus |
Corynebacterium canis |
Corynebacterium diphtheriae |
Corynebacterium durum |
Corynebacterium epidermidicanis |
Corynebacterium freiburgense |
Corynebacterium mastitidis |
Corynebacterium matruchotii |
Corynebacterium sp. |
Corynebacterium sp. 713182/2012 |
Corynebacterium sp. jw37 |
Corynebacterium sp. NML 97-0186 |
Corynebacterium sp. NML96-0085 |
Corynebacterium spheniscorum |
Corynebacterium ulcerans |
Cronobacter dublinensis |
Cronobacter sakazakii |
Delftia lacustris |
Desulfovibrio desulfuricans |
Desulfovibrio piger |
Desulfovibrio sp. |
Desulfovibrio sp. 3_1_syn3 |
Desulfovibrio sp. 6_1_46AFAA |
Devosia geojensis |
Dialister invisus |
Dialister micraerophilus |
Dialister propionicifaciens |
Dialister sp. E2_20 |
Dielma fastidiosa |
Dorea formicigenerans |
Dorea longicatena |
Dysgonomonas capnocytophagoides |
Eggerthella lenta |
Eggerthella sinensis |
Eggerthella sp. HGA1 |
Eisenbergiella tayi |
Enterobacter sp. BS2-1 |
Enterobacter sp. UDC345 |
Enterococcus faecalis |
Enterococcus hirae |
Enterococcus pallens |
Enterococcus sp. C6I11 |
Enterococcus sp. SI-4 |
Erysipelatoclostridium ramosum |
Eubacterium callanderi |
Eubacterium limosum |
Eubacterium sp. SA11 |
Faecalibacterium prausnitzii |
Faecalibacterium sp. canine oral taxon 147 |
Finegoldia magna |
Finegoldia sp. S9 AA1-5 |
Flavonifractor plautii |
Fusicatenibacter saccharivorans |
Fusobacterium mortiferum |
Fusobacterium nucleatum |
Fusobacterium sp. CM21 |
Fusobacterium sp. CM22 |
Fusobacterium varium |
Gardnerella vaginalis |
Gemella morbillorum |
Gemella sp. 933-88 |
Gordonibacter pamelaeae |
Gordonibacter sp. CEBAS 1/15P |
Granulicatella adiacens |
Granulicatella elegans |
Haemophilus influenzae |
Haemophilus parainfluenzae |
Herbaspirillum seropedicae |
Herbaspirillum sp. AU13035 |
Herbaspirillum sp. YR522 |
Hespellia porcina |
Holdemania filiformis |
Howardella ureilytica |
Intestinimonas butyriciproducens |
Klebsiella sp. B12 |
Kluyvera georgiana |
Lachnospira pectinoschiza |
Lactobacillus algidus |
Lactobacillus crispatus |
Lactobacillus curvatus |
Lactobacillus delbrueckii |
Lactobacillus gasseri |
Lactobacillus iners |
Lactobacillus mucosae |
Lactobacillus paracasei |
Lactobacillus plantarum |
Lactobacillus rhamnosus |
Lactobacillus saerimneri |
Lactobacillus salivarius |
Lactobacillus sanfranciscensis |
Lactobacillus sp. BL302 |
Lactobacillus sp. CR-609S |
Lactobacillus sp. TAB-26 |
Lactobacillus sp. TAB-30 |
Lactococcus lactis |
Lactococcus sp. MH5-2 |
Lactococcus sp. TP2MJ |
Lactonifactor longoviformis |
Lautropia sp. TeTO |
Leptotrichia sp. PG10 |
Leuconostoc carnosum |
Leuconostoc inhae |
Leuconostoc lactis |
Megamonas funiformis |
Megasphaera cerevisiae |
Megasphaera sp. S6-MB2 |
Methanobrevibacter smithii |
Methanosphaera stadtmanae |
Methylobacterium adhaesivum |
Methylobacterium jeotgali |
Mitsuokella jalaludinii |
Mitsuokella multacida |
Mitsuokella sp. TM-10 |
Mobiluncus curtisii |
Mobiluncus mulieris |
Mogibacterium sp. CM96 |
Murdochiella asaccharolytica |
Murdochiella sp. S9 PR-10 |
Mycobacterium sp. UNC410CL29Cvi84 |
Negativicoccus sp. S5-A15 |
Negativicoccus succinicivorans |
Neisseria elongata |
Neisseria mucosa |
Neisseria oralis |
Ochrobactrum sp. SCTS14 |
Odoribacter laneus |
Odoribacter splanchnicus |
Oribacterium sp. OBRC12 |
Oscillibacter valericigenes |
Pantoea sp. CWB304 |
Parabacteroides distasonis |
Parabacteroides goldsteinii |
Parabacteroides gordonii |
Parabacteroides johnsonii |
Parabacteroides merdae |
Parabacteroides sp. D25 |
Parabacteroides sp. J1502 |
Paraeggerthella hongkongensis |
Paraprevotella clara |
Paraprevotella xylaniphila |
Parasporobacterium paucivorans |
Parasutterella excrementihominis |
Parvibacter caecicola |
Parvimonas micra |
Parvimonas sp. oral taxon 110 |
Pasteurella pneumotropica |
Pediococcus argentinicus |
Peptoclostridium difficile |
Peptococcus sp. canine oral taxon 334 |
Peptococcus sp. S9 Pr-12 |
Peptoniphilus coxii |
Peptoniphilus duerdenii |
Peptoniphilus lacrimalis |
Peptoniphilus sp. 1-14 |
Peptoniphilus sp. 2002-2300004 |
Peptoniphilus sp. 2002-38328 |
Peptoniphilus sp. 7-2 |
Peptoniphilus sp. BV3AC2 |
Peptoniphilus sp. gpac018A |
Peptoniphilus sp. oral taxon 375 |
Peptoniphilus sp. oral taxon 836 |
Peptoniphilus sp. S9 PR-13 |
Peptostreptococcus anaerobius |
Peptostreptococcus stomatis |
Phascolarctobacterium faecium |
Phascolarctobacterium sp. 377 |
Phascolarctobacterium sp. canine oral taxon 149 |
Phascolarctobacterium succinatutens |
Porphyromonas asaccharolytica |
Porphyromonas bennonis |
Porphyromonas catoniae |
Porphyromonas endodontalis |
Porphyromonas sp. 2026 |
Porphyromonas uenonis |
Prevotella bivia |
Prevotella buccalis |
Prevotella disiens |
Prevotella nanceiensis |
Prevotella nigrescens |
Prevotella oris |
Prevotella sp. BV3C7 |
Prevotella sp. S4-10 |
Prevotella timonensis |
Propionibacterium acnes |
Propionibacterium sp. MSP09A |
Pseudoflavonifractor capillosus |
Pseudomonas aeruginosa |
Pseudomonas sp. a101-18-2 |
Ralstonia pickettii |
Ralstonia sp. A52 |
Robinsoniella sp. KNHs210 |
Roseburia cecicola |
Roseburia faecis |
Roseburia hominis |
Roseburia intestinalis |
Roseburia inulinivorans |
Roseburia sp. 11SE39 |
Roseburia sp. DJF_RR73 |
Rothia dentocariosa |
Rothia mucilaginosa |
Scardovia wiggsiae |
Slackia piriformis |
Slackia sp. NATTS |
Slackia sp. S8 F4 |
Solobacterium moorei |
Solobacterium sp. S4-A19 |
Sphingomonas aquatilis |
Sphingomonas changbaiensis |
Sphingomonas oligophenolica |
Staphylococcus sp. 3348O2 |
Staphylococcus sp. C9I2 |
Streptococcus agalactiae |
Streptococcus australis |
Streptococcus dysgalactiae |
Streptococcus gordonii |
Streptococcus mutans |
Streptococcus parasanguinis |
Streptococcus pasteurianus |
Streptococcus peroris |
Streptococcus sp. 11aTha1 |
Streptococcus sp. 2011_Ileo_MS_A10 |
Streptococcus sp. 2011_Oral_MS_A3 |
Streptococcus sp. 3244O2 |
Streptococcus sp. BS35a |
Streptococcus sp. F0442 |
Streptococcus sp. GMD6S |
Streptococcus sp. oral taxon G59 |
Streptococcus sp. S16-11 |
Streptococcus thermophilus |
Subdoligranulum variabile |
Sutterella sp. 252 |
Sutterella sp. YIT 12072 |
Sutterella stercoricanis |
Sutterella wadsworthensis |
Tepidimonas sp. AK30 |
Terrisporobacter glycolicus |
Turicibacter sanguinis |
Ureaplasma urealyticum |
Varibaculum cambriense |
Varibaculum sp. CCUG 45114 |
Veillonella atypica |
Veillonella parvula |
Veillonella rogosae |
Veillonella sp. 2011_Oral_VSA_B12 |
Veillonella sp. 2011_Oral_VSA_C12 |
Veillonella sp. 2011_Oral_VSA_D3 |
Veillonella sp. AS16 |
Veillonella sp. CM60 |
Veillonella sp. MSA12 |
Victivallis vadensis |
Weissella hellenica |