The Sutterella genus can be high or low in CFS patients. I did a post earlier in increasing it.

For updated information see Microbiome Prescription

DataPunk.Net

INHIBITED BY

• Polymannuronic acid

ENHANCED BY

• Chemotherapy
• High protein diet

PubMed Data

There are 70+ studies on PubMed.

• Disease:
  • Increased abundance of Sutterella spp. and Ruminococcus torques in feces of children with autism spectrum disorder [2013].
    • Application of novel PCR-based methods for detection, quantitation, and phylogenetic characterization of Sutterella species in intestinal biopsy samples from children with autism and gastrointestinal disturbances[2012].
  • “At the genus level, we observed significant increases in the numbers of Sutterella… in the Food Sensitive group.” [2016]
  • Gut microbiome in Down syndrome [2014].  “Sutterella. In particular, the abundance of this last microorganism significantly correlated with the Aberrant Behavior Checklist (ABC) total score, allowing us to hypothesize a possible role for this microbial genus in behavioral features in DS.”
  • Molecular inventory of faecal microflora in patients with Crohn’s disease[2005].
  • “Sutterella, …were enriched in the Metabolic syndrome  group,” [2017]
  • Cross sectional evaluation of the gut-microbiome metabolome axis in an Italian cohort of IBD patients [2017]. ” Sutterella and Veillonella were increased,”
• Probiotics:
  • “L. acidophilus JCM1132(T) and B. longum JCM1217(T) …inhibit the growth of Sutterella wadsworthensis.” [2015]
  • “Lactobacillus plantarum LIP-1 …significantly less lipopolysaccharide-producing bacteria (especially Bilophila, Sutterella and Oscillibacter) ” [2017]
• Diet / Life Style
  • “Many of the bacteria, e.g. … Sutterella, whose proportions increase with exposure to bisphenol A (BPA) and ethinyl estradiol (EE), ” [2016]
  • “A high-fat diet (HFD) alters metabolites …Sutterella spp., [were reduced] [2016]
• Antibiotics:
  • ” Over 95% of S. wadsworthensis are susceptible to amoxicillin“[2004]
  • “cefoxitin, ceftriaxone, imipenem, and meropenem …All strains of Clostridium perfringens, Fusobacterium nucleatum, Peptostreptococcus, and Sutterella wadsworthensis were susceptible to all agents tested.” [2000]

Bottom Line

Avoid

• BPA bottles

Take

• Lactobacillus plantarum probiotics
• Bifidobacterium Longum probiotics
• High Fat diet

DataPunk.Net has no information on Herbaspirillum (genus) 

For updated information see Microbiome Prescription

PubMed Data

PubMed has 260+ studies on this genus. Most studies deal with agricultural occurrence.

• Disease:
  • “Herbaspirillum species are not known to be human pathogens. We report on the identification of Herbaspirillum from cultures from 28 persons with cystic fibrosis (CF). ” [2008]
    • “Presence of Pandoraea and Herbaspirillum species within the
      Irish CF population” [1993]
  • “Herbaspirillum species are capable of causing systemic infections in immunocompromised patients. It may present as a nosocomial common-source cluster or sporadic hospital or community-onset infection and is most often misidentified as Burkholderia cepacia.” [2014]
• Probiotics:
  • “Herbaspirillum spp. and Halomonas spp., which previously had not been described in kombucha microbial culture, were found to be minor but permanent members of the community. “[2015]
• Antibiotics:
  • “Antibiotic therapy was changed to meropenem at a dose of 20 mg/kg every 8 h for a total of 7 days following the negative blood culture.” [2010]
  • “All B. cepacia isolates were resistant to at least 1 antibiotic tested, most frequently ticarcillin-clavulanate. All Herbaspirillum species isolates were susceptible to ceftazidime, levofloxacin, minocycline, moxifloxacin, ticarcillin/clavulanate, tigecycline, and trimethoprim/sulfamethoxazole. ”  [2014]

Bottom Line

• No Kombucha

Another one of these bacteria genus with little information.

For updated information see Microbiome Prescription

DataPunk.Net Data

INHIBITED BY

• Flaxseed

ENHANCED BY

• Walnuts
• Saccharomyces boulardii 

PubMed Data

There are 26+ studies on PubMed.

• Probiotics:
  • “L. rhamnosus A 191, Lactobacillus acidophilus, Bifidobacterium breve, Bifidobacterium longum (CVS Maximum Strength Probiotic)” .. appears to inhibits [2016]
  • “Candida albicans … outgrowth of Roseburia and Robinsoniella species was observed.” [2015]
• Antibiotics:
  • “Therapy with three grams of amoxicillin/clavulanate daily” [2012]
  • “treated with metronidazole intravenously (0.5 g once a day for 12 days). ” [2010]
  • cisplatin[Chemotheraphy] decreases [2016]
  • ceftriaxone treatment groups resistant [2017]

Bottom Line

• NO Walnuts (and likely no pomegranate) 
• NO Saccharomyces boulardii 

• One or more of L. rhamnosus A 191, Lactobacillus acidophilus, Bifidobacterium breve, Bifidobacterium longum may help.
  • I’m inclined to suggest using just Bifidobacterium breve, Bifidobacterium longum because they occur often as being effective against other high bacteria genus.
• Candida reduction is also important.
• Flaxseed

For updated information see Microbiome Prescription

DataPunk.Net Data

There is nothing on DataPunk.Net

PubMed Data

1. PubMed has some 1200+ studies

“Although the original description of Sarcina was made more than 150 years ago, little is known about its role in various human diseases.” [2016]

Disease

• Coincidence of celiac disease with sarcina infection [2014].
• “This case report supports a growing body of literature that Sarcina organisms contribute to ulcers and perforation.” [2015]
• Emphysematous gastritis caused by Sarcina ventriculi [2010].
• “Caloramator, Sarcina and Clostridium genera were the highest in autism children. ” [2013]

Diet

• “The patient showed symptomatic improvement following
  treated with only a gluten free diet. ” [2014]
• ” Nonlactic acid bacteria that were influenced by increased dietary ZnO included the strict anaerobic species, Sarcina ventriculi, which showed a strong numerical decrease in relative abundance (14.6 vs. 5.1%). ” [2011]
• ” ethanol extract of leaf and stem from the plant Nephelium longan (Fam-Sapindaceae – Lyc)… showed good activity against the growth of Sarcina lutea” [2010]
• ” fennel samples against E. coli, Sarcina lutea and B. subtilis strains. Fennel oil samples have shown high activity against Candida albicans.” [2008]
• ” high resistant starch diet … while Sarcina and Clostridium decreased in relative abundances” [2016]

Probiotics

• “E. faecalis L11 produced a bacteriocin with antimicrobial activity against… Bacillus subtilis, S. aureus, Listeria monocytogenes, Sarcina flava, Lactobacillus acidophilus, L. plantarum, L. delbrueckii subsp. delbrueckii, L. delbrueckii subsp. bulgaricus and Streptococcus thermophilus” [2016]

Antibiotics

• “given metronidazole (250 mg) three times daily and ciprofloxacin (250 mg) twice daily for 1 week along with sucralfate. ” [2014]

Bottom Line

Avoid

Take

• Enterococcus  faecalis probiotics
• Fennel
• lychee, rambutan, guarana, korlan, pitomba, Spanish lime and ackee. [fam-Sapindaceae]
• High resistance starch
• Gluten free diet
• Metronidazole

Some CFS patients are low and some are high.  I have done 2 earlier posts:

• Increasing Faecalibacterium
• Faecalibacterium prausnitzii – A key player for a SMALL subset

This consolidates and expands with new data.

For updated information see Microbiome Prescription

DataPunk.Net Data

NUTRIENTS/ SUBSTRATES

• Raffinose
• D-Glucose
• Galacturonic acid
• Riboflavin
• Arabinogalactan
• Stachyose (soy oligosaccharide)
• N-Acetyl-D-glucosamine
• Inulin
• Acetate
• Pectin

INHIBITED BY

• Chemotherapy
• High sugar diet
• High fat diet
• High animal protein diet
• Gallate
• Omega 3 fatty acids
• Fructo-oligosaccharides
• Bile salts
• Resistant starch (type IV)
• High animal fat diet
• Low fiber diet
• Low FODMAP diet
• Flaxseed
• High processed foods diet
• Navy bean (Cooked)

ENHANCED BY

• Fasting
• Epinephrine
• Resistant starch (type III)
• Jerusalem artichoke
• Saccharomyces boulardii
• Red wine
• Arabinogalactan
• Low animal protein diet
• Walnuts 
• Low processed foods diet
• Chicory
• Inulin
• High fiber diet
• Berberine 
• Dopamine

ANTIBIOTIC RESISTANCE

• Tetracycline 

INHIBITED BY

• Bifidobacterium
• Faecalibacterium
• Escherichia

PubMed Data

There are 540+ articles on PubMed. Over 320 of the articles deal explicitly with Faecalibacterium prausnitzii

• Disease:
  • “major depressive disorder … reduced levels of Faecalibacterium. ” [2015]
  • “Faecalibacterium, was lower in patients with multiple sclerosis.” [2015]
  • “The relative abundance of the bacterial genera …Faecalibacterium… was significantly decreased in children at risk of asthma” [2015]
  • “Bacteria from the genus Faecalibacterium were significantly more abundant in the mucosa of controls than Parkinson’s disease”. [2015]
  • “Lower in autism” [2013]
  • “At the genus level, we observed significant increases in… Faecalibacterium, … the Food Sensitivity group.”[2016]
  • “relative abundance of … Faecalibacterium…was reduced in Sjögren syndrome compared to controls. ” [2016]
  • ” Faecalibacterium prausnitzii was sharply decreased in both the fecal and biopsy specimens of the active CD patients” [2014]
• Diet:
  • “after 6 weeks of intervention with flaxseed mucilage showed alterations in abundance of thirty-three metagenomic species (P< 0.01), including decreased relative abundance of eight Faecalibacterium species. ” [2015]
  • “Associated growth of levan-degrading (e.g. Bacteroides) and butyric acid-producing (e.g. Faecalibacterium) taxa was observed in levan-supplemented media. ” [2015]
  • Increased gut microbiota diversity and abundance of Faecalibacterium prausnitzii and Akkermansia after fasting: a pilot study [2015].
  • The microbial groups that increased significantly from lupin seeds (Lupinus albus) and broad beans (Vicia faba)…Faecalibacterium prausnitzii [2015]
  • “All strains tested were bile sensitive, showing at least 80% growth inhibition in the presence of 0.5 μg/ml bile salts, “[2012]
  • ” Faecalibacterium prausnitzii proportions decreased (P = 0.007, P = 0.031 and P = 0.009, respectively) as a result of the gluten-free diet” [2009]
  • “was found to be significantly lower in broccoli-fed mice.” [2012]
  • “chitooligosaccharides (COS) and low molar mass chitosans (LMWC)…decreased in all strains ” [2012] [2006]
• Probiotics:
  • “a significant increase in Faecalibacteriumabundance observed in the animals treated with VSL#3 strains.” [2014]
  • “concomitant decrease in .. Faecalibacterium..after the probiotic [24 billion viable Lactobacillus paracasei DG cells/daily] intervention.” [2014]
    • See this post how to get this high a dosage easily.
  • Bacillus coagulans GBI-30, 6086 Modulates Faecalibacterium prausnitzii in Older Men and Women[2015].
  • Enhanced butyrate formation by cross-feeding between Faecalibacterium prausnitzii and Bifidobacterium adolescentis [2015].
  • Enterococcus durans EP1 a Promising Anti-inflammatory Probiotic Able to Stimulate sIgA and to Increase Faecalibacterium prausnitzii Abundance [2017].
  • “Bifidobacterium pseudocatenulatum in fecal cultures from some individuals accounted for the prevalence of Desulfovibrio and Faecalibacterium prausnitzii,” [2008]
• Antibiotics
  • “Rifaximin appeared to influence mainly potentially detrimental bacteria, such as Clostridium, but increasing the presence of some species, such as Faecalibacterium prausnitzii.” [2015]
  • Metronidazole… known to decrease anaerobes such as Faecalibacterium” [2016]
  • “The relative abundance of Faecalibacterium prausnitzii was unaffected except with thymol [Thyme Oil] at 500 p.p.m. of essential oils tested”
  • “proton pump inhibitor…was accompanied by a lower abundance of Faecalibacterium spp.” [2012]
  • “Oral Iron supplements treatment was associated with decreased abundances of operational taxonomic units assigned to the species Faecalibacterium prausnitzii,”  [2017]

Bottom Line

Avoid

• VSL#3 Probiotics
• Bifidobacterium adolescentis  Probiotics
• Bifidobacterium pseudocatenulatum
• Saccharomyces boulardii
• Enterococcus probiotics
• Walnuts (or pomegranates)
• Jerusalem artichoke, Inulin, Chicory
• Berberine
• High Fiber Diet
• red wine (or grape seed extract or reservatol)
• Rifaximin

Take

• Bacilus Coagulans probiotics
• Lactobacillus paracasei probiotics
• Green Tea (Gallate)
• Omega 3 fatty acids (600 mg of omega-3 daily for 14 days cited in studies )
• Navy bean (Cooked)
  • Note other beans have opposite effect
• Low fiber diet
• gluten-free diet
• High fat/ animal protein diet
• Thyme
• Bile salts
• Iron supplements
• chitosans