For updated information see Microbiome Prescription

DataPunk.Net

INHIBITED BY

• Bifidobacterium
• Streptococcus
• Clostridium
• Enterobacteriaceae
• Escherichia

PubMed Data

There are about 18+ studies on PubMed.

• Disease:
  • “primary sclerosing … was further characterized by decreased abundance of Adlercreutzia equolifaciens” [2017]
  • “In Multiple sclerosis … lower  abundance of Parabacteroides, Adlercreutzia …” [20162016]
  • “Adlercreutzia, Anaerococcus, Ethanoligenens, Gordonibacter, Lactococcus, Parasutterella, and Tissierellawere greatly reduced in prediabetic (Pre-DM) subjects,  compared with healthy subject” [2015]
• Food:
  • “Adlercreutzia, Odoribacter, and Coprococcus were significantly more abundant in group feed microcrystalline cellulose” [2017]
  • ” Gut microbiota was characterized by increased levels of Adlercreutzia, .. within 1 day of acute cold exposure” [2016]
  • “A high-saturated fat diet seems to increase counts of total anaerobic microflora and the relative abundance of Bacteroides and Bilophila. Human studies have not reported that a high-unsaturated fat diet significantly alters the gut bacterial profile; however, mouse studies have reported increases in Actinobacteria(Bifidobacterium and Adlercreutzia), …. Adlercreutzia …were increased in fish-oil-fed mice. ” [2017]
• Probiotics:
  • “revealed there was significantly lower Helicobacter apodemus, Helicobacter mesocricetorum, Allobaculum stercoricanis and Adlercreutzia equolifaciens following both interventions (L. casei Zhang or vitamin K2)” [2017]

Bottom Line

Avoid

• Getting Cold

Take

• Vitamin K2
• Lactobacillus Casei

For updated information see Microbiome Prescription

DataPunk.net Data

ENHANCED BY

• Berberine

PubMed Data

There are 25+ studies on PubMed.

• Body Impact
  • ” Results indicated fecal Ruminococcus and Butyricimonas predicted brain N-acetylaspartate (NAA). Analysis of serum biomarkers indicated Ruminococcus independently predicted serum serotonin and cortisol. ” [2017]
  • “A positive correlation was found between Butyricimonas and mean arterial pressure (MAP).” [2016]  See this page to compute your MAP
• Disease:
  • ” multiple sclerosis ..decreases in Butyricimonas” [2016]
  • “Butyricimonas, and Clostridium XlVb, which were most abundant in the Active major depressive disorder ” [2016]
• Antibiotics:
  • “resistant to vancomycin (5 μg), kanamycin (1 mg) and colistin sulphate (10 μg),….The results showed sensitivity to ampicillin, sulbactam-ampicillin, amoxicillin-clavulanic acid, piperacillin-tazobactam, imipenem, meropenem, clindamycin and metronidazole.” [2015]
  • “Susceptibility testing of the isolate revealed penicillin and ceftriaxone resistance, but susceptibility to metronidazole. ” [2016]
• Probiotics:
  • “Butyricimonas, a butyrate producer (23), and Prevotella, a propionate producer (24), increased the relative abundance more dramatically in the ProPre group… composed of Lactobacillus rhamnosus GG (LGG), viable Escherichia coli Nissle 1917 (EcN), and heat-inactivated VSL#3 (1:1:1).  ” [2016]
  • Bifidobacterium animalis subsp. lactis B-12®) and Lactobacillus rhamnosus (LGG®) … [increased]” [2017]
  • “L. salivarius UCC118 expressing bacteriocin … reduced” [2012]
  • “Clostridium butyricum  … increases” [2015]

Bottom Line

Avoid

• Bifidobacterium animalis subsp.  lactis  B-12®) [See PDF where it was found to increase it 3 fold]
• Clostridium butyricum (i.e. Miyarisan) probiotics

Take

• E.Coli Probioitics
• Lactobacillus salivarius 

The Sutterella genus can be high or low in CFS patients. I did a post earlier in increasing it.

For updated information see Microbiome Prescription

DataPunk.Net

INHIBITED BY

• Polymannuronic acid

ENHANCED BY

• Chemotherapy
• High protein diet

PubMed Data

There are 70+ studies on PubMed.

• Disease:
  • Increased abundance of Sutterella spp. and Ruminococcus torques in feces of children with autism spectrum disorder [2013].
    • Application of novel PCR-based methods for detection, quantitation, and phylogenetic characterization of Sutterella species in intestinal biopsy samples from children with autism and gastrointestinal disturbances[2012].
  • “At the genus level, we observed significant increases in the numbers of Sutterella… in the Food Sensitive group.” [2016]
  • Gut microbiome in Down syndrome [2014].  “Sutterella. In particular, the abundance of this last microorganism significantly correlated with the Aberrant Behavior Checklist (ABC) total score, allowing us to hypothesize a possible role for this microbial genus in behavioral features in DS.”
  • Molecular inventory of faecal microflora in patients with Crohn’s disease[2005].
  • “Sutterella, …were enriched in the Metabolic syndrome  group,” [2017]
  • Cross sectional evaluation of the gut-microbiome metabolome axis in an Italian cohort of IBD patients [2017]. ” Sutterella and Veillonella were increased,”
• Probiotics:
  • “L. acidophilus JCM1132(T) and B. longum JCM1217(T) …inhibit the growth of Sutterella wadsworthensis.” [2015]
  • “Lactobacillus plantarum LIP-1 …significantly less lipopolysaccharide-producing bacteria (especially Bilophila, Sutterella and Oscillibacter) ” [2017]
• Diet / Life Style
  • “Many of the bacteria, e.g. … Sutterella, whose proportions increase with exposure to bisphenol A (BPA) and ethinyl estradiol (EE), ” [2016]
  • “A high-fat diet (HFD) alters metabolites …Sutterella spp., [were reduced] [2016]
• Antibiotics:
  • ” Over 95% of S. wadsworthensis are susceptible to amoxicillin“[2004]
  • “cefoxitin, ceftriaxone, imipenem, and meropenem …All strains of Clostridium perfringens, Fusobacterium nucleatum, Peptostreptococcus, and Sutterella wadsworthensis were susceptible to all agents tested.” [2000]

Bottom Line

Avoid

• BPA bottles

Take

• Lactobacillus plantarum probiotics
• Bifidobacterium Longum probiotics
• High Fat diet

DataPunk.Net has no information on Herbaspirillum (genus) 

For updated information see Microbiome Prescription

PubMed Data

PubMed has 260+ studies on this genus. Most studies deal with agricultural occurrence.

• Disease:
  • “Herbaspirillum species are not known to be human pathogens. We report on the identification of Herbaspirillum from cultures from 28 persons with cystic fibrosis (CF). ” [2008]
    • “Presence of Pandoraea and Herbaspirillum species within the
      Irish CF population” [1993]
  • “Herbaspirillum species are capable of causing systemic infections in immunocompromised patients. It may present as a nosocomial common-source cluster or sporadic hospital or community-onset infection and is most often misidentified as Burkholderia cepacia.” [2014]
• Probiotics:
  • “Herbaspirillum spp. and Halomonas spp., which previously had not been described in kombucha microbial culture, were found to be minor but permanent members of the community. “[2015]
• Antibiotics:
  • “Antibiotic therapy was changed to meropenem at a dose of 20 mg/kg every 8 h for a total of 7 days following the negative blood culture.” [2010]
  • “All B. cepacia isolates were resistant to at least 1 antibiotic tested, most frequently ticarcillin-clavulanate. All Herbaspirillum species isolates were susceptible to ceftazidime, levofloxacin, minocycline, moxifloxacin, ticarcillin/clavulanate, tigecycline, and trimethoprim/sulfamethoxazole. ”  [2014]

Bottom Line

• No Kombucha

Another one of these bacteria genus with little information.

For updated information see Microbiome Prescription

DataPunk.Net Data

INHIBITED BY

• Flaxseed

ENHANCED BY

• Walnuts
• Saccharomyces boulardii 

PubMed Data

There are 26+ studies on PubMed.

• Probiotics:
  • “L. rhamnosus A 191, Lactobacillus acidophilus, Bifidobacterium breve, Bifidobacterium longum (CVS Maximum Strength Probiotic)” .. appears to inhibits [2016]
  • “Candida albicans … outgrowth of Roseburia and Robinsoniella species was observed.” [2015]
• Antibiotics:
  • “Therapy with three grams of amoxicillin/clavulanate daily” [2012]
  • “treated with metronidazole intravenously (0.5 g once a day for 12 days). ” [2010]
  • cisplatin[Chemotheraphy] decreases [2016]
  • ceftriaxone treatment groups resistant [2017]

Bottom Line

• NO Walnuts (and likely no pomegranate) 
• NO Saccharomyces boulardii 

• One or more of L. rhamnosus A 191, Lactobacillus acidophilus, Bifidobacterium breve, Bifidobacterium longum may help.
  • I’m inclined to suggest using just Bifidobacterium breve, Bifidobacterium longum because they occur often as being effective against other high bacteria genus.
• Candida reduction is also important.
• Flaxseed