Decreasing Brevundimonas genus

For updated information see Microbiome Prescription

DataPunk.Net Data

ANTIBIOTIC RESISTANCE

PubMed Data

There are 300+ studies on PubMed. Most are environmental studies.

Disease

Diet

Prebiotics

Proboitics

Antibiotics

Bottom Line

Avoid

Take

Decreasing Johnsonella genus

For updated information see Microbiome Prescription

Datapunk.net Data

INHIBITED BY

ENHANCED BY

PubMed Data

There are 5+ studies on PubMed

Disease

  • “Three genera (JohnsonellaCampylobacter, and Oribacterium) were associated with COPD but not with periodontitis. “[2017]

Diet

Prebiotic

Probiotic

Antibiotic

Bottom Line

Avoid

Take

Decreasing Fusicatenibacter genus

For updated information see Microbiome Prescription

DataPunk.Net Data

INHIBITED BY

ENHANCED BY

PubMed Data

There are 3+studies on PubMed

Disease

  • “F. saccharivorans decreased in correlation to UC activity and suppresses intestinal inflammation. These results suggest that F. saccharivorans could lead to a novel UC treatment.” [2016]
  • ” Anaerostipes (p = 0.0015), Bilophila (p = 0.0020), Clostridium XVIII (p < 0.0001), Dorea (p = 0.0071), Enterobacteriaceae_unclassified (p = 0.0010), Fusicatenibacter (p = 0.0026), Gemmiger (p = 0.0034), Ruminococcus2 (p = 0.0057), and Streptococcus (p = 0.0053) were relatively more abundant in Healthy Control group.  (versus those with Substance Use Disorders)” [2017]
  • “A decrease in Fusicatenibacter saccharivorans in patients with active ulcerative colitis has also been reported, in contrast to the increase observed in patients with quiescent disease.[42]” [2017]

Diet

Prebiotics

Probiotics

Antibiotics

Bottom Line

Avoid

Take

Reducing Lachnospira genus

For updated information see Microbiome Prescription

DataPunk.Net Data

INHIBITED BY

ENHANCED BY

PubMed Data

There are  50+ studies on PubMed

Disease

  • “. Decreased relative abundance of Lachnospira, Veillonella, Faecalibacterium, and Rothia in early infancy was reported to be associated with increased asthma risk. ” [2016]
  • Shifts in Lachnospira and Clostridium sp. in the 3-month stool microbiome are associated with preschool age asthma. [2016]
    • “We conclude that opposing shifts in the relative abundances of Lachnospira and C. neonatale in the first 3 months of life are associated with preschool age asthma”
  • “amyotrophic lateral sclerosis .. the average ratios of…lachnospira at genus level between ALS patients and healthy people were … 13.07.  [2016]
  • “Bacterial genera Roseburia, Phascolarctobacterium, Lachnospira, and Prevotella had potential positive correlation with positive mood, ” [2016]
  • “in gallstone patients there were significant (P < 0.001) increases of gut bacterial phylum Proteobacteria and decreases of three gut bacterial genera, Faecalibacterium, Lachnospira, and Roseburia. ” [2013]

Diet

  • “Christensenellaceae R7, Lachnospira, Succiniclasticum, and Ruminococcaceae NK4A214 exhibited a negative response to thiamine supplementation. ” [2017]
  • “During treatment, both 100 mg and 200 mg lactoferrin vaginal pessaries significantly decreased the occurrence of bacteria associated with BV, such as GardnerellaPrevotella, and Lachnospira, ” [2017]
  • “Vegetable intake was positively associated with the relative abundance of the Lachnospira genus” [2016]
  • “a hypocaloric hyperproteic diet … was associated with a decrease in Lachnospira” [2016]

Prebiotics

Probiotics

Antibiotics

Bottom Line

Avoid

Take

  • Thiamine
  • Flaxseed
  • “Low calories High protein diet

Review of BIOHM Gut Report

A reader forward their results from Biohm (link to kit, $117)  with the expected disclaimer:

As a general wellness product, the BIOHM Gut Report & BIOHM Candida Report are for informational purposes only and are NOT intended for use in the diagnosis, cure, mitigation, treatment, or prevention of disease or any other conditions.

Images of Report

b1

While this shows the percentage — it does not make it clear if there is either overgrowth or undergrowth for either fungal or bacteria. That is — is the volume abnormally high or low?

bh2

bh3

bh4

bh6

 

bh5

Analysis of Report

I like that the mean and +1/1 standard deviation is shown. The unfortunate aspect is that everything is in terms of percentage of all bacteria with the reference rounded to the closest 0.1%.  If the normal amount seen is 0.0001% and a person has .04% (400x more) then the chart will show 0% and (0%-0%) — so no apparent overgrowth… IMHO massive loss of  useful information!

To illustrate this, let us look at Lactobacillus. We have 0.01 and the reference range is 0 – 9.8% — SO IT IS IMPOSSIBLE TO HAVE LOW Lactobacillus according to this report reference range. I would definitely describe this as low lactobacillus. Similarly, Bifidobacterium is 0.02 with reference range of 0 – 16%. Same problem! It is impossible to get a “below reference range for lactobacillus or bifidobacterium!!

Last is Akkermansia muciniphila which is ZERO but so is the reference range….

Escherichia coli (0.04%) is above the reference range — but there is no indication if this is good or bad E coli. What is bizarre is to test for explicit probiotics,

  • Escherichia coli−Nissle strain
  • Bifidobacterium breve
  • Bifidobacterium adolescentis
  • Bifidobacterium animalis
  • Bifidobacterium pseudolongum
  • Bifidobacterium longum
  • Lactobacillus acipophylis [sic]
  • Lactobacillus rhamnosus

This does make business sense — because their business model includes selling probiotics.  I notice the absence of Lactobacillus Fermentum, Lactobacillus Keferi and other important probiotics, especially Lactobacillus Reuteri!!!!

What are probable highs using the available data?

  • Bacteroides spp.
  • Faecalibacterium prausnitzii
  • Escherichia coli — unclear

Referencing my deep dive pages (skipping E.Coli)

Bottom Line on this Test

IMHO, less useful data than uBiome at a higher cost. The number of bacteria genus examined is also less than uBiome.

If you have concerns about fungal overgrowth — this would be helpful to identify unusual species — but it is still unclear if there is an overgrowth from the report.

Bottom Line Suggestions

The lists below are done by merging the lists from the deep dives linked above. Some items may encourage one genus and discourage another genus — those are removed (unless it seems that it strongly predominates on one). The impact on Lactobacillus, Bifidobacterium and E.Coli are intentionally ignored [See this post for the logic]. This is all based on applying logic to the results of studies — thus theoretical. This is an addition (not a replacement) to this overview post.

Avoid

  • Bacillus subtilis
  • Berberine
  • Bifidobacterium adolescentis
  • Bifidobacterium Animalis subsp. Lactis BB-12
  • Bifidobacterium pseudocatenulatum
  • Broad beans  and lupin seeds
  • Enterococcus probiotics
  • Fructo-oligosaccharides
  • Gallic acid
  • gum arabic
  • High Fiber Diet
  • High meat diet
  • Jerusalem artichoke, Inulin,  Chicory
  • L. casei CCFM419
  • Lactobacillus acidophilus
  • Lactobacillus plantarum
  • L-citrulline
  • Low fat diets
  • red wine (or grape seed extract or reservatol)
  • Red wine, Grape Seed Extract
  • Resistant starch (type IV)
  • Rifaximin
  • Saccharin
  • Saccharomyces boulardii
  • Stevia
  • Tannic acid
  • VSL#3 Probiotics

Take

  • Bacillus licheniformis
  • Bacilus Coagulans probiotics
  • Bifidobacterium longum BB536
  • Bile salts
  • Chitosans
  • Garlic
  • gluten-free diet
  • Green Tea (Gallate)
  • High fat/ animal protein diet
  • Iron supplements
  • Lactobacillus paracasei probiotics
  • Lactobacillus casei strain Shirota (Yakult brand)
  • Lactobacillus kefiri LKF01
  • Low fiber diet
  • Navy bean (Cooked) Note other beans have opposite effect
  • Omega 3 fatty acids (600 mg of omega-3 daily for 14 days cited in studies )
  • Polymannuronic acid
  • Sucralose (Splenda)
  • Thyme
  • Whole-grain barley
  • β-Glucan

What about Biohm Probiotics?

“PathoBiome 30B is the name for BIOHM’s patented tri-action formulation of good bacteria (B. breve, L. acidophilus, L. rhamnosus), good fungus (S. boulardii), and a powerful enzyme (Amylase) that breaks down digestive plaque. Think of it as the engine that powers BIOHM.”

This is a definitely a NOT recommend for this reader. I cover this probiotics for other bacteria genus over growths in this post.

  • BAD – L. acidophilus
  • BAD – S. boulardii

The other two has no known effect on the over growths.

This is an education post to facilitate discussing this approach with your medical professionals. It is not medical advice for the treatment of CFS. Always consult with your medical professional before doing any  changes of diet, supplements or activity. Some items cites may interfere with prescription medicines.