Revisiting old Ubiome’s “J”

A year ago, several readers shared their ubiome for me and I did a series of post looking for patterns. See this post on the Genus Numbers.

It is time that I do deep dives for these early sharers.

Results J:

  • This is a relapse of episodes that have occurred for ~15 years.No diagnosis Key symptoms: Severe 24/7 specific point pain in umbilical area Malaise and feeling unwell Some nausea Other key biomarkers Enlarged mesenteric lymph nodes on CT scan Elevated WCC (specifically neutrophils) Very high SIgA levels My own view is a chronic infection – see biomarkers above No probiotics when the change happened
    • J1 9/29/2015
    • J2 10/23/2015
    • J3 12/4/2015
Genus J3
Sutterella 4.12
Odoribacter 3.37
Lachnospira 2.96
Bacteroides 2.17
Parabacteroides 2.01
Barnesiella 1.86

Deep Dive References

Bottom Line Suggestions

The items from each of the deep dives aligned very nicely for this microbiome, for example, Inulin was listed many times.

The lists below are done by merging the lists from the deep dives linked above. Some items may encourage one genus and discourage another genus — those are removed (unless it seems that it strongly predominates on one). The impact on Lactobacillus, Bifidobacterium and E.Coli are intentionally ignored [See this post for the logic]. This is all based on applying logic to the results of studies — thus theoretical. This is an addition (not a replacement) to this overview post.


  • Allergens
  • Amoxicillin-Clavulanate antibiotics
  • Animal-based diet
  • Aspirin (other NSAID’s are fine)
  • Bacillus subtilis
  • Bifidobacterium Animalis subsp. Lactis BB-12
  • Bifidobacterium catenulatum
  • Bifidobacterium pseudocatenulatum
  • BPA bottles
  • Broad beans  and lupin seeds
  • Canole Oil
  • fermented Korean soybean paste
  • Fructo-oligosaccharides
  • Gallic acid
  • Glutten
  • gum arabic
  • High meat diet
  • Lactobacillus casei
  • Lactobacillus acidophilus
  • Lactobacillus paracasei
  • Lactobacillus rhamnosus
  • L-citrulline
  • Lingonberries
  • Low fat diets
  • Oligofructose
  • Pomegranate
  • Proton-pump inhibitors (PPI)
  • Resistant Starch
  • Resistant starch (type IV)
  • Resveratrol (Grapes, wine) Red wine, Grape Seed Extract
  • Rhubarb
  • Saccharin
  • Saccharomyces boulardii
  • Stevia
  • stress
  • Tannic acid
  • Vegetables
  • Walnuts


  • Bacillus licheniformis
  • Bifidobacterium Longum
  • Bifidobacterium infantis,
  • Bifidobacterium bifidum,
  • Bifidobacterium adolescentis
  • Bifidobacterium breve
  • Bile supplements
  • Capsaicin(chili peppers)
  • Flaxseed
  • Garlic
  • High Fat diet
  • Lactobacillus kefiri
  • Lactobacillus reuteri
  • Lactobacilluskefiri LKF01
  • Low calories High protein diet
  • Metronidazole antibiotics
  • Oligosaccharide prebiotics
  • Polymannuronic acid
  • Sucralose (Splenda)
  • Thiamine
  • Walnuts
  • Whole-grain barley
  • Xylitol
  • β-Glucan

This is an education post to facilitate discussing this approach with your medical professionals. It is not medical advice for the treatment of CFS. Always consult with your medical professional before doing any  changes of diet, supplements or activity. Some items cites may interfere with prescription medicines.