“Members of the Odoribacter sp. can cause health problems such as abdominal abscess in humans and periodontal problems in domestic animals [1],[3]. More often, however, their presence is shown to be beneficial for the prevention of several diseases such as hypertension [1],[3]. As a member of the human intestinal microbiome, Odoribacter sp. can also modulate the host’s blood glucose concentration and blood pressure [4],[5].Thus, they are classified as atypical pathogens.” [src]

For updated information see Microbiome Prescription

DataPunk.Net Data

No data

PubMed Data

There are 35+ studies on PubMed.

Disease:

Diet:

• “Low Vitamin D…Odoribacter were depleted” [2015]
• “pomegranate juice…positively correlated with Odoribacter genus.” [2015]
• “the number of Odoribacter_f was increased in doenjang-treated mice (a fermented Korean soybean paste)” [2014]
• “stress significantly increased the relative abundance of Odoribacter,” [2015]
• “the animal-based diet caused a significant increase in the relative abundance of Bilophila, Odoribacter,”
• “the levels of Odoribacter were significantly increased by 3.3 fold at the time point of 24 h after allergen challenge“

Prebiotics:

• “oligosaccharide treatment increased the levels of Lactobacillus and Bifidobacterium and decreased the levels of Odoribacter, ” [2017]

Probiotics:

• “Bacillus subtilis CGMCC 1.1086 …the relative abundance of Alistipes, Odoribacter, Ruminococcus, Blautia and Desulfovibrio were higher, ” [2016]
• “edible bifidobacteria (Bifidobacterium longum, B. infantis, B. animalis, B. bifidum, B. adolescentis or B. breve) .. decreasing the abundance of Alistipes, Odoribacter and Clostridium. ” [2017]
• “Bifidobacterium pseudocatenulatum LI09 and Bifidobacterium catenulatum LI10, .. attenuated the D-GalN-induced Odoribacter depletion.”[2017]  – increased that is

Bottom Line

Avoid

• Allergens
• Bifidobacterium pseudocatenulatum
• Bifidobacterium catenulatum
• pomegranate juice
• fermented Korean soybean paste
• stress
• animal-based diet
• Vitamin D3

Take

• Bifidobacterium longum, B. infantis, B. animalis, B. bifidum, B. adolescentis or B. breve — study only dealt with mixture 😦
• Oligosaccharide prebiotics

” the gut bacterium Eggerthella lenta modifies the cardiac drug digoxin, and renders it inactive …implicated a role for arginine in regulating the growth of the organism”[2013]

For updated information see Microbiome Prescription

DataPunk.Net Data

ENHANCED BY

• Chemotherapy

ANTIBIOTIC RESISTANCE

• Vancomycin

PubMed Data

There are 120+ studies on PubMed.

• Disease:
  • Peritonitis caused by veillonella species and Eggerthella lenta in peritoneal dialysis.[2014]
  • “rheumatoid arthritis  associated” [2016]
  • ” Species more abundant with frailty included Eubacterium dolichum and Eggerthella lenta.” [2016]
  • “Systemic lupus erythematosus… were significantly enriched,” [2016]
• Diet:
  • Low Vitamin D… Eggerthella was enriched.[2015]
  • “the daily consumption of red wine polyphenol…significantly increased the number of … Eggerthella lenta, ” [2012]
  • The tea tree oil was the most active to Eggerthella” [2016]
• Probiotics:
•  Antibiotics:
  • “all were susceptible to amoxicillin-clavulanate, cefoxitin, metronidazole, piperacillin-tazobactam, ertapenem, and meropenem, 91% were susceptible to clindamycin, 74% were susceptible to moxifloxacin, and 39% were susceptible to penicillin.” [2015]

Bottom Line

Avoid

• Grape seed extract, wine, Resveratrol
• Arginine supplements

Take

• Vitamin D
• Tea Tree Oil

For updated information see Microbiome Prescription

DataPunk.Net Data

No Information

PubMed Data

There are 15+ studies on PubMed.

• Disease:
  • “Crohn’s disease … as large increases in Proteobacteria including Parasutterella spp. and Methylobacterium spp.” [2015]
  • “Hypothyroid Hashimoto’s thyroiditis …elevated genera of the diseased group included Escherichia-Shigella and Parasutterella. ” [2017]
  • “increase with food allergy” [2016]
  • “high in autism disorder [2013]
• Diet:
  • “enzymatically modified resistant starch ….decreased abundance of Ruminococcus, Parasutterella, ” [2015]
  • “alchohol …indicated that a reduction of Porphyromonadaceae and Parasutterella” [2017]
  • “Vitamin K2 .. significantly enriched ” [2017]
  • High Fat diet reduces [2017]
  • ” both berberine and metformin … significantly increased Parasutterella” [2015]
  • “Glucevia®, a Fraxinus angustifolia Vahl samara extract… enrichment of different taxonomic groups (Burkholderiales, Sutterellacae, Parasutterella, ” [2017]
• Probiotics:
  • “Bifidobacterium pseudocatenulatum LI09 and Bifidobacterium catenulatum LI10… enrichment of the opportunistic pathogen Parasutterella” [2017]
  • “Lactobacillus paracasei subsp. paracasei NTU 101  … no effect” [2017]
•  Antibiotics:
  • “florfenicol and azithromycin…here were declines in Alistipes, Desulfovibrio, Parasutterella and Rikenella in both the antibiotic groups. ” [2017]

Bottom Line

Avoid

• Berbine
• Metformin
• Vitamin K2
• Bifidobacterium pseudocatenulatum
• Bifidobacterium catenulatum

Take

• Alchohol
• Enzymatically modified resistant starch

Short form: This genus overgrowth is strongly associated with IBS and we also know a lot about which probiotics increases and decreases it growth.

For updated information see Microbiome Prescription

DataPunk.Net Data

Parent means this bacteria parent, Ruminococcaceae is influenced (this and other siblings may be my inference).

INHIBITED BY

• Proton-pump inhibitors (PPI)
• High fat diet
• Gallate [parent]
• Flaxseed
• High meat diet

ENHANCED BY

• β-Glucan
• Saccharomyces boulardii [parent]
• Resistant starch (type II)
• Gynostemma pentaphyllum
• Walnuts [parent]
• Resistant starch (type IV)
• Whole-grain barley
• Saccharomyces boulardii
• Berberine [parent]

ANTIBIOTIC RESISTANCE

• Vancomycin
• Teicoplanin 

PubMed Data

There are 1000+ studies on PubMed. THIS POST IS ONLY PARTIALLY COMPLETE

• Disease
  • “Ruminococcus torques (R. torques)-like (94% similarity in 16S rRNA gene sequence) phylotype was associated with severity of bowel symptoms [in IBS].  ” [2010]
  • “Ruminococcus productus-Clostridium coccoides … were higher among IBS patients”[2015]
  • “Ruminococcus albus, and Eubacterium rectale. Lactobacillus and bifidobacterium numbers were linked with low clinical activity indices in of ulcerative colitis ” [2013]
  • “children diagnosed with diarrhea predominant irritable bowel syndrome …dominated by genus Ruminococcus ” [2012]
  • “significant increases in the numbers of … Ruminococcus, .. in food sensitization (FS) in children [2016]
•  Diet:
  • “polydextrose …to significantly increase the known butyrate producer Ruminococcus intestinalis ” [2012]
  • “quercetin…had the strongest impact on Ruminococcus gauvreauii,” [2012]
    • “quercetin did not prevent growth of Ruminococcus gauvreauii, ” [2016]
  • “barley β-glucans..Ruminococcus sp. increased, ” [2015]
  • “The soy protein group had the highest relative abundance of Ruminococcus but the lowest relative abundance of Lactobacillus. ” [2017]
  • “high-salt diet increased Firmicutes/Bacteroidetes ratio, the abundances of genera Lachnospiraceae and Ruminococcus” [2017]
• Prebiotics:
  • Resistant maltodextrin..intake was associated with statistically significant increases (P < 0.001) in various operational taxonomic units matching closest to ruminococcus,[2014]
• Probiotics:
  • “Lactobacillus acidophilus   and Bifidobacterium longum ..significantly promote the growth of Ruminococcus gnavus, Ruminococcus torques, [2015]
  • “Lactobacillus salivarius Ren ..reduced the amount of Ruminococcus sp., ” [2015]
  • “L. paracasei DG …with an ∼55% decrease in Ruminococcus (P = 0.016) ” [2014]
  • “Lactobacillus rhamnosus GG …causing an increase in the abundance of Prevotella, Lactococcus, and Ruminococcus, ” [2016] [2014]
  • “The number of Ruminococcus albus was lower in .. Lactobacillus plantarum  and a mixture of Lactobacillus plantarum GF103 and Bacillus subtilis B27 ” [2017]
  • “Ruminococcus obeum, Clostridium clostridioforme, Roseburia intestinalis, Lachnospiraceae bacterium 14-2T and Coprococcus eutactus were significantly higher in Lactobacillus acidophilus birds ” [2017]
  • “Lactobacillus rhamnosus HN001 and Bifidobacterium longum ..with a decrease in Roseburia faecis and Ruminococcus gnavus abundance. ” [2017]
  • ” (e.g., Ruminococcus spp. and Clostridium spp.) that overgrew in the SI microbiota of the mice administered with L. plantarum ” [2016]
  • “B. subtilis  the relative abundance of … Ruminococcus, …were higher, ” [2016]

Bottom Line

Inconclusive (Specific Strains?) – should avoid

• Lactobacillus plantarum
• Lactobacillus rhamnosus
• Bifidobacterium longum
• Bacillus subtilis

Avoid

• Lactobacillus acidophilus
• Lactobacillus rhamnosus GG
• β-Glucan / Barley
• Saccharomyces boulardii 
• Resistant starch (type II, IV)
• Gynostemma pentaphyllum
• Walnuts (and likely pomegrantes)
• Berberine 
• Soy
• Salt
• Polydextrose
• Resistant maltodextrin.

Take

• Lactobacillus salivarius
• Lactobacillus paracasei
• Proton-pump inhibitors (PPI)
• High fat/meat diet
• Gallate (Green Tea)
• Flaxseed

The  bacteria is dorea formicigenerans reported to be low in most CFS patients by Ian Lapkin et al 2017 paper

For updated information see Microbiome Prescription

DataPunk.NetDataPunk.Net

Parent means this bacteria parent, Lachnospiraceae   is influenced (this and other siblings may be my inference).

INHIBITED BY

• Flaxseed [parent]
• Polymannuronic acid

ENHANCED BY

• Walnuts [parent]
• Saccharomyces boulardii [parent]

INHIBITED BY

• Bifidobacterium
• Streptococcus
• Escherichia

PubMed Data

There are 70+ studies on PubMed (300 by the author Dórea )

• Disease:
  • ” This resulted from an approximately 1.5-fold increase in numbers of Dorea, ” [2011]
  • “We observed an increased abundance of Psuedomonas, Mycoplana, Haemophilus, Blautia, and Doreagenera in Multiple sclerosis  patients, [2016]
  • “patients in remission from Crohn’s disease had increased proportions of Dorea longicatena” [2016]
  • ” Dorea, … were significantly increased in Autism spectrum disorders” [2017] [2016]
  • “Parkinson’s disease  reduced content of Dorea,” [2017]
  • ” Dorea …were underrepresented among subjects with food sensitization.” [2017]
  • “Dorea spp. were found in an increased in abundance in both pediatric and adult irritable bowel syndrome patients (Rajilić-Stojanović et al., 2011; Saulnier et al., 2011), which probably could explain the symptom of bloating, experienced by the majority of these patients.”
•  Diet:
  • ” At the genus level, consumption of 3 g/d HMW β-glucan increased Bacteroides (P < 0.003), tended to increase Prevotella (P < 0.1) but decreased Dorea (P < 0.1), ” [2016]
  • “The barley group had higher abundances of Akkermansia, Ruminococcus, Blautia, and Bilophila. Turicibacter and Roseburia were more abundant in the malt group, and [reduced] Parabacteroides, Dorea” [2015]
    • “High Molecular Weight Barley β-Glucan .. decreased Dorea” [2016]
    • “whole-grain barley and barley malt, decreases” [2015]
  • “23 healthy subjects were randomised into two study groups consuming a bowel preparation (Moviprep)…increased the levels of Proteobacteria, Fusobacteria and bacteria related to Dorea formicigenerans.” [2015]
  • ” At the genus level, Dialister, Dorea, Pseudobutyrivibrio, and Veillonella, belonging to the Firmicutes phylum, had statistically significant reduction with l-glutamine” [2015]
  • “Stressor-induced increases in circulating IL-6 and MCP-1 were significantly correlated with stressor-induced changes in 3 members of the microbiota, Dorea spp., Coprococcus spp., and Pseudobutyrivibrio spp.” [2011]
  • “The relative abundance of sequences from several genera belonging to the Lachnospiraceae (eg, Ruminococcus, Roseburia, Blautia, and Dorea) was lower in high … vitamin D quartiles. “
  • ” the animal-based diet caused a significant increase in the relative abundance of Bilophila, Odoribacter, Dorea and Ruminococcus (belonging to Lachnospiraceae) and a significant decrease in the level of Bifidobacterium after five days of intake. ” [2016]
  • “Among others, bacteria of the order Lactobacillales, the family Enterococcaceae and genera Enterococcus and Doreashowed a trend towards increased abundance in Tc+ (Helminth infections) ” [2016]
  • ” iron sulfate (Oral) treatment was associated with decreased abundances of operational taxonomic units assigned to the species Faecalibacterium prausnitzii, Ruminococcus bromii, Dorea sp. and Collinsella aerofaciens. “
  • “Alcohol …  significant reductions in genra Clostridium IV and XIVb (p<0.001), Dorea (p<0.01), [2017]
• Prebiotics:
  • “galactooligosaccharides (GOS) ..showed a decrease in Dorea “[2009]
  • “prebiotic (fructo-oligosaccharides (FOS) and inulin mixture)..revealed a lower abundance of Dorea” [2017]
• Probiotics:
  • “Lactobacillus rhamnosus hsryfm 1301,…was changed significantly after probiotic intervention for 28 d (P < 0.05). A positive correlation was observed between Ruminococcus spp. and serum triglycerides, Dorea spp. ” [2014] [2013]
  • Bifidobacterium longum increases two strains that increase Dorea. {Pdf]
    
• Antibiotics:
  • “decreased after treatment only in the antibiotic (amoxicillin, tetracycline and metronidazole for 2 weeks)  group. Eubacterium rectale, Dorea formicigenerans,” [2005]

Bottom Line

Avoid

• Lactobacillus rhamnosus
• Bifidobacterium longum
• Saccharomyces boulardii
• Helminth infections
• Animal-based diet
• barley
• Walnuts (and likely pomegranates)
• Stress

Take

• Galactooligosaccharides 
• Vitamin D3
• Oral Iron Supplements
• l-glutamine
• β-glucan
• Flaxseed [parent]
• Polymannuronic acid