Decreasing Succinivibrio Genus

For updated information see Microbiome Prescription

DataPunk.Net Data

Nothing

PubMed Data

There are 60+ studies on PubMed.

Disease

  • “one pneumonia with Succinivibrio spp. found in blood cultures, ” [1991]
  • “Increased during S. enterica infection: Barnesiella,Pseudobutyrivibrio, Prevotella, Lactobacillus, Anaerobacter,Roseburia, Fastidiosipila, Campylobacter and Succinivibrio [2017]
  • ” Enrichment in Prevotella and Succinivibrio in the microbiota of HIV positive individuals” [2016]

Diet

  • “Thiamine supplementation increased the abundance of cellulolytic bacteria including Bacteroides, Ruminococcus 1, Pyramidobacter, Succinivibrio, and Ruminobacter”  [2017]
  • Succinivibrio and Halomonas from the Proteobacteria phylum were overrepresented in omnivores.” [2017]
  • ” The levels of Selenomonas ruminantium, Anaerovibrio lipolytica, Ruminobacter amylophilus, Succinivibrio dextrinosolvens and Megasphaera elsdenii were increased by ginkgo extract supplementation, ” [2017]
  • “P. frutescens [Korean perilla] seed extract was accompanied by an increased abundance of Ruminobacter, Selenomonas, Succinivibrio, Shuttleworthis, Pseudobutyrivbrio, Anaerovibrio, and Roseomonas” [2016]
  • “cashew nut shell liquid ….The relative abundance of fibrolytic or formate-producing species such as Ruminococcus flavefaciens, Butyrivibrio fibrisolvens, and Treponema bryantii decreased, but species related to propionate production, including Prevotella ruminicolla, Selenomonas ruminantium, Anaerovibrio lipolytica, and Succinivibriodextrinosolvens, increased. ” [2012]
  • ” Partial fermentation of xylans was observed with Bacteroides ruminicola B14, Bacteroides succinogenes S85, Ruminococcus albus 7, Ruminococcus flavefaciens C94 and FD1, and Succinivibrio dextrinosolvens 22B. ” [1987]

Prebiotics

Probiotics

  • ” the  [Enterococcus faecium NCIMB 11181] probiotic-fed group featured elevated levels of LactobacillusEnterococcusOscillibacterSuccinivibro, and Clostridium genera and decreased levels of Escherichia and Dialister genera, compared with the control group.”
  • ” For Gram positive bacteria, Streptococcus sp., Clostridium sp., Butyrivibrio sp. and Clostridium aminophilum were increased, whereas Prevotella sp., Prevotella ruminicola, Pseudobutyrivibrio sp, Prevotella sp, Succinivibrio dextrinosolvens and Schwartzia succinivorans in Gram negative bacteria were decreased by adding Lactobacillus plantarum TUA1490L” [2013]

Antibiotics

Bottom Line

Avoid

  • Enterococcus faecium  probiotics
  • Thiamine supplements
  • High Meat Diet
  • Ginkgo
  • Cashews
  • Xylans

Take

  • Lactobacillus plantarum

Suramin and CFS – Hype? Regrets? or Hope?

This drug has become a hot topic in some CFS circles. Whenever a topic becomes hot, I try to compare it against my microbiome model. In the past, there have been a good hit rate for those that cause some improvements  — the responders appear to be those CFS patients that happen to have a specific microbiome profile.

While Suramin has been around for over a century, there have been no studies on it’s impact on the microbiome. I can find studies on aspirin but not Suramin.

What can be inferred

“DNA-dependent RNA primase is essential for de novo primer synthesis during DNA replication in all living organisms. Bacterial DnaG primase is an attractive target for inhibition because it is essential, low in copy number and structurally distinct from eukaryotic and archaeal primases. DnaG primase is sensitive to known inhibitors including suramin and doxorubicin.” [2016]

Doxorubicin Parallels

  • “However, LAB and bifidobacteria, which are key players in the intestinal microbial balance of the healthy state, might be particularly inhibited by … gemcitabine or doxorubicin.” [2016]
  • Doxorubicin (DOX) is used as a chemotherapy drug with severe carditoxicity…..In serum, perturbed metabolites include elevation of leucine, β-glucose, O-acetyl-glycoprotein, creatine, lysine, glycerin, dimethylglycine, trimethylamine-N-oxide, myo-inositol, and N-acetyl-glycoprotein, together with level decreases of acetone, lipid, lactate, glutamate, phosphocholine, acetoacetate and pyruvate. For heart, DOX exposure caused decline of lipid, lactate, leucine, alanine, glutamate, choline, xanthine, glycerin, carnitine, and fumarate, together with elevation of glutamine, creatine, inosine, taurine and malate. Metabolic changes of kidney were mainly involved in the accumulation of α-glucose, lactate, phosphocholine, betaine, threonine, choline, taurine, glycine, urea, hypoxanthine, glutamate, and nicotinamide, coupled with reduction of asparagine, valine, methionine, tyrosine, lysine, alanine, leucine, ornithine, creatine, lipid, and acetate. ” [2016] In other words — it appears to be doing a major shift in many bacteria!
  • It does impact a different microbiome associated condition — Autism [2017]

DnaG

Side Note: Why Chemotheraphy may cause remission?

I have personally meet three different former-CFS patients that went into remission from chemotheraphy. While researching above, I came across this in one of the studies which could explain why.

  • “All 34 species  of lactic acid bacteria (LAB), bifidobacteria and other intestinal bacteria proved to be resistant at the highest concentrations assayed [minimum inhibitory concentrations (MICs) > 128 µg/mL] to [chemotherapeutic agents] capecitabine, cyclophosphamide, docetaxel, erlotinib, gefitinib, irinotecan and paclitaxel.” [2016]

Bottom Line

Prior to trials in humans with CFS, I really believe that a detail (genus level) study on it’s impact of a mouse microbiome is needed (at least). This is cheap and fast to do and will fill a major gap in the existing literature on this drug.

I am particularly concerned because if something goes wrong… you can’t get rid of it from your body fast:

  • “Suramin is approximately 99-98% protein bound in the serum and has a half-life of 41–78 days average of 50 days ; “
  • “The mechanism of action for suramin is unclear”

This feels like a Russian roulette drug because there is too little known about it. Reducing the risks (and better understanding why it works for autism etc) can be done by just doing some simple animal studies that could be published in months.

Recommendation: Do not become a guinea pig on insufficiently researched drug trials.


Addendum

Several readers referred me to the TACA 2017 talk, which is available here. My notes on this talk are below.  Note: I am not opposed to it, I do not have the rose color glass of blind hope, and want to do due scientific diligence.

  • Is it caused by metabolic syndrome — I agree, the cause of the syndrome according to my model is microbiome dysfunction (thus altering the metabolites produced).
  • 2:35: His focus is on just ONE of the metabolites: ATP.  I do not disagree that ATP may be one of many metabolites involved.
  • 5:40: A pattern appears — there is a documented pattern of microbiome shifts with Autism.  This becomes a chicken and the egg issue quickly.
    • He cites microbiome dysfunction, from the intertwining of items, he picked ATP as the fulcrum. He describes nothing to exclude microbiome as being a valid alternative fulcrum
    • “Membranes of Escherichia coli contain an adenosine 5′-triphosphate (ATP) energy-transducing system” [1975] [2003] so if E.Coli is diminished, then ATP production is reduced.
  • 20:00 — did not mention until much later that those who received Suramin very often have a rash at the injection site (mentioned in reviews on Autism sites) which means that parents may have had tells.
  • 23:00 — full of personal stories — very emotional, but very subjective

Bottom line: His results did not exclude microbiome hypothesis or other theories.  From his slides, he appears to indicate that the microbiome changed with those treated.   To exclude the microbiome hypothesis, he would need to show there was no change of the microbiome and there was improvement.

 

 

Decreasing Brevundimonas genus

For updated information see Microbiome Prescription

DataPunk.Net Data

ANTIBIOTIC RESISTANCE

PubMed Data

There are 300+ studies on PubMed. Most are environmental studies.

Disease

Diet

Prebiotics

Proboitics

Antibiotics

Bottom Line

Avoid

Take

Decreasing Johnsonella genus

For updated information see Microbiome Prescription

Datapunk.net Data

INHIBITED BY

ENHANCED BY

PubMed Data

There are 5+ studies on PubMed

Disease

  • “Three genera (JohnsonellaCampylobacter, and Oribacterium) were associated with COPD but not with periodontitis. “[2017]

Diet

Prebiotic

Probiotic

Antibiotic

Bottom Line

Avoid

Take

Decreasing Fusicatenibacter genus

For updated information see Microbiome Prescription

DataPunk.Net Data

INHIBITED BY

ENHANCED BY

PubMed Data

There are 3+studies on PubMed

Disease

  • “F. saccharivorans decreased in correlation to UC activity and suppresses intestinal inflammation. These results suggest that F. saccharivorans could lead to a novel UC treatment.” [2016]
  • ” Anaerostipes (p = 0.0015), Bilophila (p = 0.0020), Clostridium XVIII (p < 0.0001), Dorea (p = 0.0071), Enterobacteriaceae_unclassified (p = 0.0010), Fusicatenibacter (p = 0.0026), Gemmiger (p = 0.0034), Ruminococcus2 (p = 0.0057), and Streptococcus (p = 0.0053) were relatively more abundant in Healthy Control group.  (versus those with Substance Use Disorders)” [2017]
  • “A decrease in Fusicatenibacter saccharivorans in patients with active ulcerative colitis has also been reported, in contrast to the increase observed in patients with quiescent disease.[42]” [2017]

Diet

Prebiotics

Probiotics

Antibiotics

Bottom Line

Avoid

Take